Welcome to Algorithmic Biology Laboratory
The Algorithmic Biology Lab research focuses on quantitative modeling of various life phenomena at cellular and molecular levels. In particular, ABL research includes modeling RNA structure and ncRNA-mRNA interactions, de novo assembly of short and long sequencing reads for genomic and transcriptomic studies, de novo genomic variation detection, synthetic biology, bionics, and robotics. ABL is directed by Dr. Chitsaz and is located in the Computer Science Building on the Colorado State University campus.

SNP-Phenotype Associations
Our SNP-Phenotype association corpus extracted from biomedical natural language texts, called SNPPhenA, will soon be published in the Journal of Biomedical Semantics.

Extraction of drug-drug interaction from literature
Our work on extraction of drug-drug interaction from literature has been published in PLOS One.

New members: Akash Shrestha and Ali Ebrahimpour
We are glad that Akash Shrestha and Ali Ebrahimpour have joined the ABL as graduate students.

New member: Dr. Suzanne Gallagher
We are glad that Dr. Suzanne Gallagher has joined the ABL as a research associate.

Synergistic single-cell genomics
Our work on synergistic co-assembly of multiple related single-cell genomes has been accepted in Frontiers in Bioengineering and Biotechnology, Genomic Assay Technology.

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